diff --git a/erpnext/stock/doctype/stock_ledger_entry/stock_ledger_entry.py b/erpnext/stock/doctype/stock_ledger_entry/stock_ledger_entry.py
index 0a1678da9eb..9e446d84a21 100644
--- a/erpnext/stock/doctype/stock_ledger_entry/stock_ledger_entry.py
+++ b/erpnext/stock/doctype/stock_ledger_entry/stock_ledger_entry.py
@@ -175,6 +175,9 @@ class StockLedgerEntry(Document):
 		if frappe.in_test and frappe.flags.ignore_serial_batch_bundle_validation:
 			return
 
+		if self.is_adjustment_entry:
+			return
+
 		if not self.get("via_landed_cost_voucher"):
 			SerialBatchBundle(
 				sle=self,
diff --git a/erpnext/stock/doctype/stock_reconciliation/stock_reconciliation.py b/erpnext/stock/doctype/stock_reconciliation/stock_reconciliation.py
index 9b98307dec0..47fed1531ea 100644
--- a/erpnext/stock/doctype/stock_reconciliation/stock_reconciliation.py
+++ b/erpnext/stock/doctype/stock_reconciliation/stock_reconciliation.py
@@ -479,6 +479,8 @@ class StockReconciliation(StockController):
 			frappe.db.set_value("Serial and Batch Entry", batch.name, update_values)
 
 	def remove_items_with_no_change(self):
+		from erpnext.stock.stock_ledger import get_stock_value_difference
+
 		"""Remove items if qty or rate is not changed"""
 		self.difference_amount = 0.0
 
@@ -514,6 +516,14 @@ class StockReconciliation(StockController):
 				company=self.company,
 			)
 
+			if not item_dict.get("qty") and not item.qty and not item.valuation_rate and not item.current_qty:
+				difference_amount = get_stock_value_difference(
+					item.item_code, item.warehouse, self.posting_date, self.posting_time, self.name
+				)
+
+				if abs(difference_amount) > 0:
+					return True
+
 			if (
 				(item.qty is None or item.qty == item_dict.get("qty"))
 				and (item.valuation_rate is None or item.valuation_rate == item_dict.get("rate"))